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The cistrome db toolkit database

網頁2024年4月10日 · Spoiler alert: the answer is maybe! Although, my inclusion of the word “actually” betrays my bias. Vector databases are having their day right now. Three different vector DB companies have raised money on valuations up to $700 million (paywall link). Surprisingly, their rise in popularity is not for their “original” purpose in recommendation … 網頁Cistrome DB, also known as Cistrome Data Browser, is an interactive database that enables visualization of public ChIP-seq, DNase-seq, and ATAC-seq data. Backed by the …

MotifGenie: a Python application for searching transcription factor …

網頁Cistrome DB更新版于2024年发布，包含大约47000个人类和老鼠样本，与第一版相比，新收集了大约24000个数据集。 研究团队将持续维护数据库，纳入新的数据，并开发新的特 … 網頁2024年9月21日 · Methods: In the research, the mRNA expression of SAE1 was analyzed via the cancer genome atlas (TCGA) and gene expression omnibus (GEO) database. Cistrome DB Toolkit was used to predict which transcription factors (TFs) are most likely to increase SAE1 expression in TNBC. dr reeves ft smith ar https://shconditioning.com

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis…

網頁2016年10月26日 · Cistrome DB is a comprehensive annotated resource of publicly available ChIP-seq and chromatin accessibility data in human and mouse. Samples collected include those from the NCBI GEO database ( 8, 9 ), ENCODE database ( 16) and Roadmap Epigenomics project ( 12 ). 網頁The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale, also known as the in vivo genome-wide location of transcription factor binding … 網頁图片来源：Cistrome DB 做肿瘤相关研究的同学都清楚，肿瘤细胞中组蛋白的甲基化、乙酰化等表观遗传修饰可能会发生一定改变。 而我想知道的是，在我研究的肝癌细胞HepG2中，乙酰化的组蛋白H3是否参与了我感兴趣的某基因的转录调控。因为不确定细胞系、组蛋白的拼写规则及表观遗传修饰的表示 ... dr reeves endocrinologist chattanooga tn

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis…

Category:Cistrome Explorer: an interactive visual analysis tool for large …

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The cistrome db toolkit database

Dana Farber Data Science Cancer Research

網頁2024年4月10日 · The Coatomer protein complex Zeta 1 (COPZ1) has been reported to play an essential role in maintaining the survival of some types of tumors. In this study, we sought to explore the molecular characteristics of COPZ1 and its clinical prognostic value through a pan-cancers bioinformatic analysis. We found that COPZ1 was extremely prevalent in a … 網頁2024年4月17日 · Toolkit旨在帮助用户轻松地从Cistrome DB的大量数据集中提取有效信息：1）输入基因名称， 查看有哪些转录因子可能调控该基因；2）输入基因组区域，查看有哪些转录因子可能结合在该区域；3）输入peak结果，查看哪些转录因子的结果与你的输入结果有明显的overlap,可以用于转录因子的colocation分析。 批量数据下载 在遵循Cistrome …

The cistrome db toolkit database

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網頁2024年6月16日 · Here, we present DESSO-DB, a web database developed to allow efficient access to the identified motifs and diverse motif analyses. ... ChIP-seq data (including 547 TFs in 359 cell lines) from Cistrome DB using DESSO, which … 網頁Backed by the huge collection of Cistrome DB, the Toolkit allows users to quickly examine their hypothesis regarding gene regulation through public ChIP-seq (protein factors and histone marks), chromatin accessibility (DNase-seq and ATAC-seq) data. Three functions have been implemented in Cistrome DB Toolkit website.

網頁In addition to cis-regulatory data, the Cistrome DB includes data analysis tools, such as Lisa, the Cistrome DB Toolkitand Cistrome-GO, which can help researchers find answers to questions about gene regulation, accelerating their efforts to find effective cancer treatments. Immunotherapy Response Biomarkers (TIDE) 網頁Have a try at CistromeDB Toolkit. If you have a T ranscription F actor ChIP-seq (and TF perturbed expression) data, Cistrome-GO help you predict the function of this TF. Please …

網頁Toolkit for CistromeDB Toolkit for Cistrome Data Browser What factors regulate your gene of interest? Species Gene or transcript Data type in Cistrome The half-decay distance to … http://cistrome.org/

網頁2011年8月22日 · In addition to the standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Cistrome is available at http://cistrome.org/ap/. Rationale

網頁2024年1月1日 · Cistrome DB Toolkit. (A) An example of the first Cistrome DB Toolkit function, showing putative regulators of the human androgen receptor (AR) gene. A parameter of 100kb regulatory potential decay rate was selected to include long-range enhancers of AR. Each college student happiness rankings網頁2024年1月8日 · The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin … dr reeves infectious disease louisville kyhttp://www.cistrome.com/ college student health insurance nj